3MOTIF: visualizing conserved protein sequence motifs in the protein structure database
نویسندگان
چکیده
منابع مشابه
3MOTIF: visualizing conserved protein sequence motifs in the protein structure database
SUMMARY 3MOTIF is a web application that visually maps conserved sequence motifs onto three-dimensional protein structures in the Protein Data Bank (PDB; Berman et al., Nucleic Acids Res., 28, 235-242, 2000). Important properties of motifs such as conservation strength and solvent accessible surface area at each position are visually represented on the structure using a variety of color shading...
متن کامل3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs
Computational methods such as sequence alignment and motif construction are useful in grouping related proteins into families, as well as helping to annotate new proteins of unknown function. These methods identify conserved amino acids in protein sequences, but cannot determine the specific functional or structural roles of conserved amino acids without additional study. In this work, we prese...
متن کاملConserved helicase motifs in the PIF protein.
Recently, Hodgman (1) and Gorbalenya et al. (2) observed the presence of several conserved motifs in a subset of cellular and viral proteins. Seraphin et al. subsequently identified a second set of motifs (3), related to the first one, which is present in a novel series of proteins (3—5). Based on the known activity of several of these proteins, the polypeptides containing these motifs are beli...
متن کاملDatabase and Prediction of Sequence Motifs on Protein Molecular Interactions
We are developing a new prediction tool for protein-protein interactions based on sequence motifs. For this attempt, we have collected the information of the interaction data from existing databases and literatures, and arranged it into a new interaction sequence motif database. This paper describes the database and the prediction system for protein-protein interaction motifs.
متن کاملRepresentative Protein Sequence and Structure Database
The database provides the information about the non-redundant protein dataset (1573 proteins) obtained from the Protein Data Bank. The information includes PDB ID, Length of the protein, Resolution, PDB Secondary structure, PDB secondary structure summary, PHD secondary structure prediction, PHD secondary structure prediction summary, sequence. We further revised the PDB Secondary structure sum...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2003
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btf862